psidev.psi.mi.xml.model.ExperimentalInteractor java code examples

public ExperimentalInteractor( Interactor interactor, Collection<ExperimentDescription> experiments ) {
  setInteractor( interactor );
  this.experiments = experiments;
}

if ( mExperimentalInteractor.hasExperiments() ) {
  if ( jExperimentalInteractor.getExperimentRefList() == null ) {
    jExperimentalInteractor.setExperimentRefList( new ExperimentRefList() );
  for ( ExperimentDescription experimentDescription : mExperimentalInteractor.getExperiments() ) {
    jExperimentalInteractor.getExperimentRefList().getExperimentReves().add( experimentDescription.getId() );
} else if ( mExperimentalInteractor.hasExperimentRefs() ) {
  if ( jExperimentalInteractor.getExperimentRefList() == null ) {
    jExperimentalInteractor.setExperimentRefList( new ExperimentRefList() );
  for ( ExperimentRef experimentDescription : mExperimentalInteractor.getExperimentRefs() ) {
    jExperimentalInteractor.getExperimentRefList().getExperimentReves().add( experimentDescription.getRef() );
jExperimentalInteractor.setInteractorRef( mExperimentalInteractor.getInteractor().getId() );

if ( ei.hasExperimentRefs() ) {
    for ( ExperimentRef eref : ei.getExperimentRefs()) {
      ExperimentDescription ed = findExperimentDescriptionInInteraction(eref, parentInteraction);
        ei.getExperiments().add( ed );
    ei.getExperimentRefs().clear();
    for ( ExperimentRef eref : ei.getExperimentRefs()) {
            " all the interactions and participants then use references to pre-declared experiments or all the experiments are only described at the level of the interactions and no experiment reference can be used.");
      ei.getExperiments().add( ed );
    ei.getExperimentRefs().clear();
if ( ei.hasInteractorRef() ) {
  InteractorRef ref = ei.getInteractorRef();
  InputStreamRange irange = index.getInteractorPosition( ref.getRef() );
  InputStream iis = null;
        " all the interactions and participants then use references to pre-declared interactors or all the interactors are only described at the level of the participant and no interactor reference can be used.");
  ei.setInteractorRef( null );
  ei.setInteractor( interactor );

Interactor interactor = experimentalInteractor.getInteractor();
LOG.debug("createBiopaxEntity, participant: " + participant.getId() 
    + ", exp. interactor: " + interactor.getId());
if(experimentalInteractor.hasExperiments()) {
  for(ExperimentDescription exp : experimentalInteractor.getExperiments()) {
    LOG.debug("createBiopaxEntity, making EFs for exp: " 
        + exp.getId() + "; exp.ent: " + expEntity.getUri());

psidev.psi.mi.xml.model.ExperimentalInteractor mExperimentalInteractor = new psidev.psi.mi.xml.model.ExperimentalInteractor();
    ExperimentDescription experiment = experimentDAO.retreive( jExperimentId );
    if ( experiment == null ) {
      mExperimentalInteractor.getExperimentRefs().add( new ExperimentRef( jExperimentId ) );
    } else {
      mExperimentalInteractor.getExperiments().add( experiment );
mExperimentalInteractor.setInteractor( interactor );

if ( mExperimentalInteractor.hasExperiments() ) {
  if ( jExperimentalInteractor.getExperimentRefList() == null ) {
    jExperimentalInteractor.setExperimentRefList( new ExperimentRefListType() );
  for ( ExperimentDescription experimentDescription : mExperimentalInteractor.getExperiments() ) {
    jExperimentalInteractor.getExperimentRefList().getExperimentReves().add( experimentDescription.getId() );
} else if ( mExperimentalInteractor.hasExperimentRefs() ) {
  if ( jExperimentalInteractor.getExperimentRefList() == null ) {
    jExperimentalInteractor.setExperimentRefList( new ExperimentRefListType() );
  for ( ExperimentRef experimentDescription : mExperimentalInteractor.getExperimentRefs() ) {
    jExperimentalInteractor.getExperimentRefList().getExperimentReves().add( experimentDescription.getRef() );
jExperimentalInteractor.setInteractorRef( mExperimentalInteractor.getInteractor().getId() );

psidev.psi.mi.xml.model.ExperimentalInteractor mExperimentalInteractor = new psidev.psi.mi.xml.model.ExperimentalInteractor();
    ExperimentDescription experiment = experimentDAO.retreive( jExperimentId );
    if ( experiment == null ) {
      mExperimentalInteractor.getExperimentRefs().add( new ExperimentRef( jExperimentId ) );
    } else {
      mExperimentalInteractor.getExperiments().add( experiment );
mExperimentalInteractor.setInteractor( interactor );

public ExperimentalInteractor( Interactor interactor ) {
  setInteractor( interactor );
}

Javadoc

Java class for anonymous complex type.

The following schema fragment specifies the expected content contained within this class.

 
<complexType> 
<complexContent> 
<restriction base="{http://www.w3.org/2001/XMLSchema}anyType"> 
<sequence> 
<choice> 
<element name="interactorRef" type="{http://www.w3.org/2001/XMLSchema}int"/> 
<element name="interactor" type="{net:sf:psidev:mi}interactorElementType"/> 
</choice> 
<element name="experimentRefList" type="{net:sf:psidev:mi}experimentRefListType" minOccurs="0"/> 
</sequence> 
</restriction> 
</complexContent> 
</complexType>

Most used methods

getExperiments
Gets the value of the experimentRefList property.
getInteractor
Gets the value of the interactor property.
hasExperiments
Check if the optional experiments is defined.
<init>
getExperimentRefs
Gets the value of the experimentRef property.
getInteractorRef
Gets the value of the interactorRef property.
hasExperimentRefs
Check if the optional experimentRefs is defined.
hasInteractorRef
setInteractor
Sets the value of the interactor property.
setInteractorRef
Sets the value of the interactorRef property.

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How to useExperimentalInteractor in psidev.psi.mi.xml.model

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How to use
ExperimentalInteractor
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psidev.psi.mi.xml.model