How to use

Checksum

in

psidev.psi.mi.jami.model

public String getRigid() {
  return this.rigid != null ? this.rigid.getValue() : null;
}

CvTerm method1 = checksum1.getMethod();
CvTerm method2 = checksum2.getMethod();
String checksum1Value = checksum1.getValue();
String checksum2Value = checksum2.getValue();

/**
 * To check if a checksum does have a specific method
 * @param checksum the checksum
 * @param methodId the checksum MI identifier
 * @param methodName the checksum method name
 * @return true if the checksum has the method with given name/identifier
 */
public static boolean doesChecksumHaveMethod(Checksum checksum, String methodId, String methodName){
  if (checksum == null || (methodName == null && methodId == null)){
    return false;
  }
  CvTerm method = checksum.getMethod();
  // we can compare identifiers
  if (methodId != null && method.getMIIdentifier() != null){
    // we have the same method id
    return method.getMIIdentifier().equals(methodId);
  }
  // we need to compare methodNames
  else if (methodName != null) {
    return methodName.equalsIgnoreCase(method.getShortName());
  }
  return false;
}

CvTerm method1 = checksum1.getMethod();
CvTerm method2 = checksum2.getMethod();
String checksum1Value = checksum1.getValue();
String checksum2Value = checksum2.getValue();

  /**
   *
   * @param checksum
   * @return the hashcode consistent with the equals method for this comparator
   */
  public static int hashCode(Checksum checksum){
    if (unambiguousChecksumComparator == null){
      unambiguousChecksumComparator = new UnambiguousChecksumComparator();
    }

    if (checksum == null){
      return 0;
    }

    int hashcode = 31;
    CvTerm method = checksum.getMethod();
    hashcode = 31*hashcode + UnambiguousCvTermComparator.hashCode(method);

    String value = checksum.getValue();
    hashcode = 31*hashcode + value.hashCode();

    return hashcode;
  }
}

public String getStandardInchi() {
  return standardInchi != null ? standardInchi.getValue() : null;
}

public void writeChecksum(Checksum checksum) throws IOException {
  if (checksum != null){
    // first method
    escapeAndWriteString(checksum.getMethod().getShortName());
    getWriter().write(MitabUtils.XREF_SEPARATOR);
    // then value
    escapeAndWriteString(checksum.getValue());
  }
}

public String getSmile() {
  return smile != null ? smile.getValue() : null;
}

CvTerm method = checksum.getMethod();
    return checksum.getValue().equals(value);
    return checksum.getValue().equals(value);

public String getRogid() {
  return this.rogid != null ? this.rogid.getValue() : null;
}

final OntologyAccess access = ontologyManager.getOntologyAccess("MI");
CvTerm method = checksum.getMethod();
if (checksum.getValue() == null ||
    checksum.getValue().trim().length() == 0 ||
    PsiXmlUtils.UNSPECIFIED.equals(checksum.getValue()) ||
    MitabUtils.UNKNOWN_ID.equals(checksum.getValue())){
  MiContext xrefContext = RuleUtils.buildContext(checksum, "checksum");
  if (messages.isEmpty()){

public String getStandardInchiKey() {
  return standardInchiKey != null ? standardInchiKey.getValue() : null;
}

public String getRigid() {
  return this.rigid != null ? this.rigid.getValue() : null;
}