org.dcm4chee.xds2.infoset.rim.RegistryPackageType java code examples

Add the Codota plugin to your IDE and get smart completions

private void myMethod () {
 FileOutputStream f =File file;new FileOutputStream(file)
String name;new FileOutputStream(name)
File file;new FileOutputStream(file, true)
Smart code suggestions by Tabnine
}

private boolean isSubmissionSet(String sourceID) {
  return sourceID!=null && sourceID.equals(submissionSet.getId());
}

/**
 * Create an instance of {@link RegistryPackageType }
 * 
 */
public RegistryPackageType createRegistryPackageType() {
  return new RegistryPackageType();
}

public XDSFolder(PnRRequest pnrReq, String uniqueID) {
  this.pnrRequest = pnrReq;
  id = pnrReq.nextFolderID();
  metadata = Util.rimFactory.createRegistryPackageType();
  metadata.setId(id);
  List<JAXBElement<? extends IdentifiableType>> list = pnrRequest.getRegistryObjectList().getIdentifiable();
  list.add(Util.rimFactory.createRegistryPackage(metadata));
  metadata.getExternalIdentifier().add(Util.createExternalIdentifier(pnrRequest.nextID(), XDSConstants.UUID_XDSFolder_patientId, 
      id, pnrRequest.getPatientID(), XDS_FOLDER_PATIENT_ID));
  metadata.getExternalIdentifier().add(Util.createExternalIdentifier(pnrRequest.nextID(), XDSConstants.UUID_XDSFolder_uniqueId, 
      id, uniqueID, XDS_FOLDER_UNIQUE_ID));
  metadata.getClassification().add(Util.createClassification(pnrReq.nextID(), XDSConstants.UUID_XDSFolder, id));
  this.uniqueID = uniqueID;
  assoc = pnrReq.addAssociation(PnRRequest.SUBMISSION_SET_ID, id, XDSConstants.HAS_MEMBER);
}

private String[] getSubmissionUIDandPatID(SubmitObjectsRequest req) {
  String[] result = new String[2];
  List<JAXBElement<? extends IdentifiableType>> objs = req.getRegistryObjectList().getIdentifiable();
  IdentifiableType obj;
  whole: for (int i=0,len=objs.size() ; i < len ; i++) {
    obj = objs.get(i).getValue();
    if (obj instanceof RegistryPackageType) {
      List<ExternalIdentifierType> list = ((RegistryPackageType)obj).getExternalIdentifier();
      if (list != null) {
        for (ExternalIdentifierType eiType : list) {
          if (XDSConstants.UUID_XDSSubmissionSet_patientId.equals(eiType.getIdentificationScheme())) {
            result[1] = eiType.getValue();
          } else if (XDSConstants.UUID_XDSSubmissionSet_uniqueId.equals(eiType.getIdentificationScheme())) {
            result[0] = eiType.getValue();
          } else {
            continue;
          }
          if (result[0] != null && result[1] != null)
            break whole;
        }
      }
    }
  }
  return result;
}

public PnRRequest(String sourceID, String submissionSetUID, String patID, String srcPatID) {
  if (sourceID == null || submissionSetUID == null || patID == null || srcPatID == null) {
    StringBuilder sb = new StringBuilder();
    sb.append("Parameter values must not be null! (");
    if (sourceID == null) sb.append("sourceID,");
    if (submissionSetUID == null) sb.append("submissionSetUID,");
    if (patID == null) sb.append("patID,");
    if (srcPatID == null) sb.append("srcPatID,");
    sb.setCharAt(sb.length()-1, ')');
    throw new IllegalArgumentException(sb.toString());
  }
  this.submissionSetUID = submissionSetUID;
  patientID = patID;
  srcPatIDSlot = Util.createSlot(XDSConstants.SLOT_NAME_SOURCE_PATIENT_ID, null, srcPatID);
  provideAndRegisterDocumentSetRequest = iheFactory.createProvideAndRegisterDocumentSetRequestType();
  SubmitObjectsRequest sor = Util.rimFactory.createSubmitObjectsRequest();
  registryObjectList = Util.rimFactory.createRegistryObjectListType();
  sor.setRegistryObjectList(registryObjectList);
  provideAndRegisterDocumentSetRequest.setSubmitObjectsRequest(sor);
  submissionSet = Util.rimFactory.createRegistryPackageType();
  submissionSet.setId(SUBMISSION_SET_ID);
  submissionSet.getExternalIdentifier().add(Util.createExternalIdentifier(nextID(), XDSConstants.UUID_XDSSubmissionSet_uniqueId, 
      SUBMISSION_SET_ID, submissionSetUID, "XDSSubmissionSet.uniqueId"));
  submissionSet.getExternalIdentifier().add(Util.createExternalIdentifier(nextID(), XDSConstants.UUID_XDSSubmissionSet_patientId, 
      SUBMISSION_SET_ID, patID, "XDSSubmissionSet.patientId"));
  submissionSet.getExternalIdentifier().add(Util.createExternalIdentifier(nextID(), XDSConstants.UUID_XDSSubmissionSet_sourceId, 
      SUBMISSION_SET_ID, sourceID, "XDSSubmissionSet.sourceId"));
  registryObjectList.getIdentifiable().add(Util.rimFactory.createRegistryPackage(submissionSet));
  submissionSet.getClassification().add(Util.createClassification(nextID(), XDSConstants.UUID_XDSSubmissionSet, SUBMISSION_SET_ID));
}

private String[] getSubmissionUIDandPatID(SubmitObjectsRequest req) {
  String[] result = new String[2];
  List<JAXBElement<? extends IdentifiableType>> objs = req.getRegistryObjectList().getIdentifiable();
  IdentifiableType obj;
  whole: for (int i=0,len=objs.size() ; i < len ; i++) {
    obj = objs.get(i).getValue();
    if (obj instanceof RegistryPackageType) {
      List<ExternalIdentifierType> list = ((RegistryPackageType)obj).getExternalIdentifier();
      if (list != null) {
        for (ExternalIdentifierType eiType : list) {
          if (XDSConstants.UUID_XDSSubmissionSet_patientId.equals(eiType.getIdentificationScheme())) {
            result[1] = eiType.getValue();
          } else if (XDSConstants.UUID_XDSSubmissionSet_uniqueId.equals(eiType.getIdentificationScheme())) {
            result[0] = eiType.getValue();
          } else {
            continue;
          }
          if (result[0] != null && result[1] != null)
            break whole;
        }
      }
    
    }
  }
  return result;
}

public static void checkFolderMetadata(RegistryPackageType rpType) throws XDSException {
  if (rpType.getId() == null || rpType.getId().trim().length() == 1) {
    throw new XDSException(XDSException.XDS_ERR_REGISTRY_METADATA_ERROR, 
        "Folder: Missing entryUUID attribute!", null);
  }
  
  checkCodes(rpType, toList(XDSConstants.UUID_XDSFolder_codeList));
  checkExternalIdentifiers(rpType, toList(XDSConstants.UUID_XDSFolder_patientId,
      XDSConstants.UUID_XDSFolder_uniqueId));
}

private String[] getSubmissionUIDandPatID(SubmitObjectsRequest req) {
  String[] result = new String[]{UNKNOWN, UNKNOWN};
  List<JAXBElement<? extends IdentifiableType>> objs = req.getRegistryObjectList().getIdentifiable();
  IdentifiableType obj;
  whole: for (int i=0,len=objs.size() ; i < len ; i++) {
    obj = objs.get(i).getValue();
    if (obj instanceof RegistryPackageType) {
      List<ExternalIdentifierType> list = ((RegistryPackageType)obj).getExternalIdentifier();
      if (list != null) {
        for (ExternalIdentifierType eiType : list) {
          if (XDSConstants.UUID_XDSSubmissionSet_patientId.equals(eiType.getIdentificationScheme())) {
            if (eiType.getValue() != null)
              result[1] = eiType.getValue();
          } else if (XDSConstants.UUID_XDSSubmissionSet_uniqueId.equals(eiType.getIdentificationScheme())) {
            if (eiType.getValue() != null)
              result[0] = eiType.getValue();
          } else {
            continue;
          }
          if (result[0] != UNKNOWN && result[1] != UNKNOWN)
            break whole;
        }
      }
    
    }
  }
  return result;
}

public static RegistryPackageType getRegistryPackage(SubmitObjectsRequest sor, String classificationUUID) {
  List<JAXBElement<? extends IdentifiableType>> list = sor.getRegistryObjectList().getIdentifiable();
  String id = null;
  IdentifiableType identifiable;
  if ( classificationUUID != null ) {
    ClassificationType ct;
    for ( int i = 0, len = list.size() ; i < len ; i++) {
      identifiable = list.get(i).getValue();
      if ( identifiable instanceof ClassificationType) {
        ct = (ClassificationType) identifiable;
        if ( classificationUUID.equals( ct.getClassificationNode())) {
          id = ct.getClassifiedObject();
          break;
        }
      }
    }
  }
  RegistryPackageType rp;
  for ( int i = 0, len = list.size() ; i < len ; i++ ) {
    identifiable = list.get(i).getValue();
    if ( identifiable instanceof RegistryPackageType) {
      rp = (RegistryPackageType) identifiable;
      if ( id == null || id.equals( rp.getId())) {
        return rp;
      }
    }
  }
  return null;
}

public RegistryPackage toRegistryPackage(RegistryPackageType rpType) throws XDSException {
  RegistryPackage rp = null;
  List<ExternalIdentifierType> list = rpType.getExternalIdentifier();
  if (list != null) {
    for (ExternalIdentifierType eiType : list) {

public static void checkSubmissionSetMetadata(RegistryPackageType rpType) throws XDSException {
  if (rpType.getId() == null || rpType.getId().trim().length() == 1) {
    throw new XDSException(XDSException.XDS_ERR_REGISTRY_METADATA_ERROR, 
        "SubmissionSet: Missing entryUUID attribute!", null);
  }
  
  checkSlots(rpType, toList(XDSConstants.SLOT_NAME_SUBMISSION_TIME));
  
  checkCodes(rpType, toList(XDSConstants.UUID_XDSSubmissionSet_contentTypeCode));
  checkExternalIdentifiers(rpType, toList(
      XDSConstants.UUID_XDSSubmissionSet_patientId,
      XDSConstants.UUID_XDSSubmissionSet_uniqueId,
      XDSConstants.UUID_XDSSubmissionSet_sourceId
      ));
}

private List<ExtrinsicObjectType> checkRequest(ProvideAndRegisterDocumentSetRequestType req) throws XDSException {
  SubmitObjectsRequest sor = req.getSubmitObjectsRequest();
  RegistryPackageType submissionSet = InfosetUtil.getRegistryPackage(sor, XDSConstants.UUID_XDSSubmissionSet);
  if ( submissionSet == null ) {
    log.error("No RegistryPackage id=SubmissionSet found!");
    throw new XDSException( XDSException.XDS_ERR_REPOSITORY_ERROR, 
        XDSException.XDS_ERR_MISSING_REGISTRY_PACKAGE, null);
  } else if (submissionSet.getId() == null || submissionSet.getId().trim().length() == 0) {
    throw new XDSException(XDSException.XDS_ERR_REPOSITORY_METADATA_ERROR, "Missing XDSSubmissionSet.entryUUID!", null);
  }
  List<ExtrinsicObjectType> extrObjs = InfosetUtil.getExtrinsicObjects(req.getSubmitObjectsRequest());
  checkPatientIDs(req, submissionSet, extrObjs);
  Map<String, Document> docs = InfosetUtil.getDocuments(req);
  if ( extrObjs.size() > docs.size() ) {
    log.warn("Missing Documents! Found more ExtrinsicObjects("+extrObjs.size()+") than Documents("+docs.size()+")!");
    throw new XDSException(XDSException.XDS_ERR_MISSING_DOCUMENT,
        "", null);
  } else if ( extrObjs.size() < docs.size() ) {
    log.warn("Missing Document Metadata! Found less ExtrinsicObjects("+extrObjs.size()+") than Documents("+docs.size()+")!");
    throw new XDSException(XDSException.XDS_ERR_MISSING_DOCUMENT_METADATA,
        "", null);
  }
  return extrObjs;
}

Javadoc

RegistryPackage is the mapping of the same named interface in ebRIM. It extends RegistryObject. A RegistryPackage is a named collection of objects.

Java class for RegistryPackageType complex type.

The following schema fragment specifies the expected content contained within this class.

 
<complexType name="RegistryPackageType"> 
<complexContent> 
<extension base="{urn:oasis:names:tc:ebxml-regrep:xsd:rim:3.0}RegistryObjectType"> 
<sequence> 
<element ref="{urn:oasis:names:tc:ebxml-regrep:xsd:rim:3.0}RegistryObjectList" minOccurs="0"/> 
</sequence> 
</extension> 
</complexContent> 
</complexType>

Most used methods

Popular in Java

Parsing JSON documents to java classes using gson
setScale (BigDecimal)
findViewById (Activity)
runOnUiThread (Activity)
FlowLayout (java.awt)
A flow layout arranges components in a left-to-right flow, much like lines of text in a paragraph. F
Kernel (java.awt.image)
Options (org.apache.commons.cli)
Main entry-point into the library. Options represents a collection of Option objects, which describ
BasicDataSource (org.apache.commons.dbcp)
Basic implementation of javax.sql.DataSource that is configured via JavaBeans properties. This is no
Get (org.apache.hadoop.hbase.client)
Used to perform Get operations on a single row. To get everything for a row, instantiate a Get objec
Option (scala)
Top 17 PhpStorm Plugins

How to useRegistryPackageType in org.dcm4chee.xds2.infoset.rim

Best Java code snippets using org.dcm4chee.xds2.infoset.rim.RegistryPackageType (Showing top 12 results out of 315)

How to use
RegistryPackageType
in
org.dcm4chee.xds2.infoset.rim