org.dcm4chee.xds2.infoset.rim.ExternalIdentifierType java code examples

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public static String setExternalIdentifierValue(String urn, String value, RegistryObjectType ro) {
  List<ExternalIdentifierType> list = ro.getExternalIdentifier();
  ExternalIdentifierType ei;
  for ( int i = 0, len = list.size() ; i < len ; i++ ) {
    ei = list.get(i);
    if ( ei.getIdentificationScheme().equals(urn)) {
      String oldValue = ei.getValue();
      ei.setValue(value);
      return oldValue;
    }
  }
  ei = new ExternalIdentifierType();
  ei.setIdentificationScheme(urn);
  ei.setValue(value);
  list.add(ei);
  return null;
}

public static ExternalIdentifierType createExternalIdentifier(String id,
    String scheme, String registryObject, String value, String name) {
  ExternalIdentifierType ei = rimFactory.createExternalIdentifierType();
  ei.setId(id);
  ei.setIdentificationScheme(scheme);
  ei.setObjectType("urn:oasis:names:tc:ebxml-regrep:ObjectType:RegistryObject:ExternalIdentifier");
  ei.setRegistryObject(registryObject);
  ei.setValue(value);
  InternationalStringType is = rimFactory.createInternationalStringType();
  LocalizedStringType v = rimFactory.createLocalizedStringType();
  v.setValue(name);
  is.getLocalizedString().add(v);
  ei.setName(is);
  return ei;
}

private String getPatID(ExternalIdentifierType eiType) {
  if (XDSConstants.UUID_XDSDocumentEntry_patientId.equals(eiType.getIdentificationScheme()) ||
      XDSConstants.UUID_XDSFolder_patientId.equals(eiType.getIdentificationScheme()) ||
      XDSConstants.UUID_XDSSubmissionSet_patientId.equals(eiType.getIdentificationScheme())
      ) {
    return eiType.getValue() != null ? eiType.getValue() : "";
  }
  return null;
}

private void copyExternalIdentifierType(Set<ExternalIdentifier> externalIdentifiers, RegistryObjectType roType) {
  if (externalIdentifiers != null) {
    List<ExternalIdentifierType> eiTypes = roType.getExternalIdentifier();
    ExternalIdentifierType eiType;
    for (ExternalIdentifier ei : externalIdentifiers) {
      eiType = factory.createExternalIdentifierType();
      toEbXmlObj(ei, eiType);
      if (ei.getIdentificationScheme() != null) {
        eiType.setIdentificationScheme(ei.getIdentificationScheme().getId());
      } else {
        log.error("IdentificationScheme is null! ExternalIdentifier id:"+ei.getId());
        eiType.setIdentificationScheme("urn:willi:12345-abcd-123");
      }
      eiType.setValue(ei.getValue());
      if (ei.getRegistryObject() != null) {
        eiType.setRegistryObject(ei.getRegistryObject().getId());
      } else {
        log.error("RegistryObject is null! ExternalIdentifier id:"+ei.getId());
        eiType.setRegistryObject("urn:willi:12345-abcd-456");
      }
      eiTypes.add(eiType);
    }
  }
}

private void copyExternalIdentifier(List<ExternalIdentifierType> list, RegistryObject ro) throws XDSException {
  if (list != null) {
    ExternalIdentifier ei;
    for (ExternalIdentifierType eiType : list) {
      ei = new ExternalIdentifier();
      toPersistenceObj(eiType, ei);
      ei.setIdentificationScheme((ClassificationScheme)
          getRegistryObject(eiType.getIdentificationScheme()));
      ei.setValue(eiType.getValue());
      ei.setRegistryObject(eiType.getRegistryObject() != null ? getRegistryObject(eiType.getRegistryObject()) : ro);
      ro.getExternalIdentifiers().add(ei);
    }
  }
}

private XADPatient getPatient(ExternalIdentifierType eiType) throws XDSException {
  XADPatient pat = getPatient(eiType.getValue(), cfg.isCreateMissingPIDs());
  if (pat.getIssuerOfPatientID().getNamespaceID() != null) {
    log.debug("XAD PatientID ("+eiType.getValue()+") contains Namespace ID! Corrected in metadata!");
    eiType.setValue(pat.getXADPatientID());
  }
  return pat;
}
private XADPatient getPatient(String pid, boolean createMissing) throws XDSException {

private static void checkExternalIdentifiers(RegistryObjectType roType,
    List<String> requiredExternalIdentifiers) throws XDSException {
  List<ExternalIdentifierType> eiList = roType.getExternalIdentifier();
  for (ExternalIdentifierType ei : eiList) {
    requiredExternalIdentifiers.remove(ei.getIdentificationScheme());
  }
  if (requiredExternalIdentifiers.size() > 0) 
    throw new XDSException(XDSException.XDS_ERR_REGISTRY_METADATA_ERROR, 
        "Missing attributes in '"+roType.getId()+"'! codes:"+requiredExternalIdentifiers, null);
}

/**
 * Create an instance of {@link ExternalIdentifierType }
 * 
 */
public ExternalIdentifierType createExternalIdentifierType() {
  return new ExternalIdentifierType();
}

public static String getExternalIdentifierValue(String urn, RegistryObjectType ro) {
  List<ExternalIdentifierType> list = ro.getExternalIdentifier();
  ExternalIdentifierType ei;
  for ( int i = 0, len = list.size() ; i < len ; i++ ) {
    ei = list.get(i);
    if ( ei.getIdentificationScheme().equals(urn)) {
      return ei.getValue();
    }
  }
  return null;
}
public static String setExternalIdentifierValue(String urn, String value, RegistryObjectType ro) {

private String[] getSubmissionUIDandPatID(SubmitObjectsRequest req) {
  String[] result = new String[]{UNKNOWN, UNKNOWN};
  List<JAXBElement<? extends IdentifiableType>> objs = req.getRegistryObjectList().getIdentifiable();
  IdentifiableType obj;
  whole: for (int i=0,len=objs.size() ; i < len ; i++) {
    obj = objs.get(i).getValue();
    if (obj instanceof RegistryPackageType) {
      List<ExternalIdentifierType> list = ((RegistryPackageType)obj).getExternalIdentifier();
      if (list != null) {
        for (ExternalIdentifierType eiType : list) {
          if (XDSConstants.UUID_XDSSubmissionSet_patientId.equals(eiType.getIdentificationScheme())) {
            if (eiType.getValue() != null)
              result[1] = eiType.getValue();
          } else if (XDSConstants.UUID_XDSSubmissionSet_uniqueId.equals(eiType.getIdentificationScheme())) {
            if (eiType.getValue() != null)
              result[0] = eiType.getValue();
          } else {
            continue;
          }
          if (result[0] != UNKNOWN && result[1] != UNKNOWN)
            break whole;
        }
      }
    
    }
  }
  return result;
}

private String[] getSubmissionUIDandPatID(SubmitObjectsRequest req) {
  String[] result = new String[2];
  List<JAXBElement<? extends IdentifiableType>> objs = req.getRegistryObjectList().getIdentifiable();
  IdentifiableType obj;
  whole: for (int i=0,len=objs.size() ; i < len ; i++) {
    obj = objs.get(i).getValue();
    if (obj instanceof RegistryPackageType) {
      List<ExternalIdentifierType> list = ((RegistryPackageType)obj).getExternalIdentifier();
      if (list != null) {
        for (ExternalIdentifierType eiType : list) {
          if (XDSConstants.UUID_XDSSubmissionSet_patientId.equals(eiType.getIdentificationScheme())) {
            result[1] = eiType.getValue();
          } else if (XDSConstants.UUID_XDSSubmissionSet_uniqueId.equals(eiType.getIdentificationScheme())) {
            result[0] = eiType.getValue();
          } else {
            continue;
          }
          if (result[0] != null && result[1] != null)
            break whole;
        }
      }
    }
  }
  return result;
}

private String[] getSubmissionUIDandPatID(SubmitObjectsRequest req) {
  String[] result = new String[2];
  List<JAXBElement<? extends IdentifiableType>> objs = req.getRegistryObjectList().getIdentifiable();
  IdentifiableType obj;
  whole: for (int i=0,len=objs.size() ; i < len ; i++) {
    obj = objs.get(i).getValue();
    if (obj instanceof RegistryPackageType) {
      List<ExternalIdentifierType> list = ((RegistryPackageType)obj).getExternalIdentifier();
      if (list != null) {
        for (ExternalIdentifierType eiType : list) {
          if (XDSConstants.UUID_XDSSubmissionSet_patientId.equals(eiType.getIdentificationScheme())) {
            result[1] = eiType.getValue();
          } else if (XDSConstants.UUID_XDSSubmissionSet_uniqueId.equals(eiType.getIdentificationScheme())) {
            result[0] = eiType.getValue();
          } else {
            continue;
          }
          if (result[0] != null && result[1] != null)
            break whole;
        }
      }
    
    }
  }
  return result;
}

if (list != null) {
  for (ExternalIdentifierType eiType : list) {
    if (XDSConstants.UUID_XDSSubmissionSet_patientId.equals(eiType.getIdentificationScheme())) {
      if (rp == null) {
        XDSValidator.checkSubmissionSetMetadata(rpType);
    } else if (XDSConstants.UUID_XDSSubmissionSet_uniqueId.equals(eiType.getIdentificationScheme())) {
      if (rp == null) {
        XDSValidator.checkSubmissionSetMetadata(rpType);
        rp = new XDSSubmissionSet();
      ((XDSSubmissionSet)rp).setUniqueId(eiType.getValue());
    } else if (XDSConstants.UUID_XDSFolder_patientId.equals(eiType.getIdentificationScheme())) {
      if (rp == null) {
        XDSValidator.checkFolderMetadata(rpType);
    } else if (XDSConstants.UUID_XDSFolder_uniqueId.equals(eiType.getIdentificationScheme())) {
      if (rp == null){
        XDSValidator.checkFolderMetadata(rpType);
        rp = new XDSFolder();
      ((XDSFolder)rp).setUniqueId(eiType.getValue());

public ExtrinsicObject toExtrinsicObject(ExtrinsicObjectType eoType) throws XDSException {
  ExtrinsicObject eo;
  XDSDocumentEntry doc = null;
  if (XDSConstants.UUID_XDSDocumentEntry.equals(eoType.getObjectType())) {
    XDSValidator.checkDocumentEntryMetadata(eoType);
    doc = new XDSDocumentEntry();
    eo = doc;
    List<ExternalIdentifierType> list = eoType.getExternalIdentifier();
    if (list != null) {
      for (ExternalIdentifierType eiType : list) {
        if (XDSConstants.UUID_XDSDocumentEntry_patientId.equals(eiType.getIdentificationScheme())) {
          doc.setPatient(getPatient(eiType));
        } else if (XDSConstants.UUID_XDSDocumentEntry_uniqueId.equals(eiType.getIdentificationScheme())) {
          XDSValidator.checkAlreadyExists(eiType.getValue(), eoType, session);
          doc.setUniqueId(eiType.getValue());
        }
      }
    }
    doc.setSourcePatient(getPatient(getSlotValue(eoType, XDSConstants.SLOT_NAME_SOURCE_PATIENT_ID), true));
  } else {
    eo = new ExtrinsicObject();
  }
  toPersistenceObj(eoType, eo);
  eo.setMimeType(eoType.getMimeType());
  return eo;
}

Javadoc

ExternalIdentifier is the mapping of the same named interface in ebRIM. It extends RegistryObject.

Java class for ExternalIdentifierType complex type.

The following schema fragment specifies the expected content contained within this class.

 
<complexType name="ExternalIdentifierType"> 
<complexContent> 
<extension base="{urn:oasis:names:tc:ebxml-regrep:xsd:rim:3.0}RegistryObjectType"> 
<attribute name="registryObject" use="required" type="{urn:oasis:names:tc:ebxml-regrep:xsd:rim:3.0}referenceURI" /> 
<attribute name="identificationScheme" use="required" type="{urn:oasis:names:tc:ebxml-regrep:xsd:rim:3.0}referenceURI" /> 
<attribute name="value" use="required" type="{urn:oasis:names:tc:ebxml-regrep:xsd:rim:3.0}LongName" /> 
</extension> 
</complexContent> 
</complexType>

Most used methods

getIdentificationScheme
Gets the value of the identificationScheme property.
getValue
Gets the value of the value property.
setIdentificationScheme
Sets the value of the identificationScheme property.
setValue
Sets the value of the value property.
setRegistryObject
Sets the value of the registryObject property.
<init>
getRegistryObject
Gets the value of the registryObject property.
setId
setName
setObjectType

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How to useExternalIdentifierType in org.dcm4chee.xds2.infoset.rim

Best Java code snippets using org.dcm4chee.xds2.infoset.rim.ExternalIdentifierType (Showing top 14 results out of 315)

How to use
ExternalIdentifierType
in
org.dcm4chee.xds2.infoset.rim