org.dcm4che3.data.IOD java code examples

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}

  public IOD get(String uri) throws IOException {
    IOD iod = map.get(uri);
    if (iod == null)
      map.put(uri, iod = IOD.load(uri));
    return iod;
  }
}

@Override
protected IOD queryKeysIOD(QueryRetrieveLevel rootLevel,
    boolean relational) {
  IOD iod = new IOD();
  iod.add(new IOD.DataElement(Tag.StudyInstanceUID, VR.UI,
          IOD.DataElementType.TYPE_0, -1, -1, 0));
  iod.add(new IOD.DataElement(Tag.SeriesInstanceUID, VR.UI,
      IOD.DataElementType.TYPE_0, -1, -1, 0));
  iod.add(new IOD.DataElement(Tag.SOPInstanceUID, VR.UI,
      IOD.DataElementType.TYPE_0, -1, -1, 0));
  return iod;
}

private DataElement getLastDataElement() {
  IOD iod = iodStack.getLast();
  return iod.get(iod.size()-1);
}

public static IOD load(String uri) throws IOException {
  if (uri.startsWith("resource:")) {
    try {
      uri = ResourceLocator.getResource(uri.substring(9), IOD.class);
    } catch (NullPointerException npe) {
      throw new FileNotFoundException(uri);
    }
  } else if (uri.indexOf(':') < 2) {
    uri = new File(uri).toURI().toString();
  }
  IOD iod = new IOD();
  iod.parse(uri);
  iod.trimToSize();
  return iod;
}

  @Override
  protected IOD retrieveKeysIOD(QueryRetrieveLevel rootLevel,
      boolean relational) {
    IOD iod = queryKeysIOD(rootLevel, relational);
    iod.add(new IOD.DataElement(Tag.SeriesInstanceUID, VR.UI,
        IOD.DataElementType.TYPE_1, -1, -1, 0));
    return iod;
  }
},

private void startItem(String id, String idref, String type) throws SAXException {
  IOD iod;
  if (idref != null) {
    if (type != null)
      throw new SAXException("<Item> with idref must not specify type");
      
    iod = id2iod.get(idref);
    if (iod == null)
      throw new SAXException(
          "could not resolve <Item idref:\"" + idref + "\"/>");
  } else { 
    iod = new IOD();
    if (type != null)
      iod.setType(typeOf(type));
    if (locator != null)
      iod.setLineNumber(locator.getLineNumber());
  }
  getLastDataElement().addItemIOD(iod);
  iodStack.add(iod);
  if (id != null)
    id2iod.put(id, iod);
  this.idref = idref;
  itemConditions = true;
  elementConditions = false;
}

private IOD[] checkforMissingItems(int[] matchingItems, IOD[] itemIODs) {
  IOD[] missingItems = new IOD[matchingItems.length];
  int n = 0;
  for (int i = 0; i < matchingItems.length; i++) {
    IOD itemIOD = itemIODs[i];
    if (matchingItems[i] == 0
        && itemIOD.getType() == DataElementType.TYPE_1)
      missingItems[n++] = itemIOD;
  }
  return n > 0 ? Arrays.copyOf(missingItems, n) : null;
}

  getLastDataElement().setCondition(cond.trim());
else 
  iodStack.getLast().setCondition(cond.trim());
elementConditions = false;
itemConditions = false;

appendPrefixTo(level+1, sb);
sb.append("Missing Item");
appendIODRef(iod.getLineNumber(), sb);
sb.append(StringUtils.LINE_SEPARATOR);

for (int j = 0; j < itemIODs.length; j++) {
  IOD itemIOD = itemIODs[j];
  IOD.Condition itemCondition = itemIOD.getCondition();
  if (itemCondition != null) {
    String id = itemCondition.id();

@Override
protected IOD retrieveKeysIOD(QueryRetrieveLevel rootLevel,
    boolean relational) {
  IOD iod = queryKeysIOD(rootLevel, relational);
  iod.add(new IOD.DataElement(Tag.PatientID, VR.LO,
      IOD.DataElementType.TYPE_1, 1, 1, 0));
  return iod;
}

@Override
protected IOD queryKeysIOD(QueryRetrieveLevel rootLevel,
    boolean relational) {
  IOD iod = new IOD();
  iod.add(new IOD.DataElement(Tag.StudyInstanceUID, VR.UI,
          IOD.DataElementType.TYPE_0, -1, -1, 0));
  iod.add(new IOD.DataElement(Tag.SeriesInstanceUID, VR.UI,
      IOD.DataElementType.TYPE_0, -1, -1, 0));
  iod.add(new IOD.DataElement(Tag.SOPInstanceUID, VR.UI,
      IOD.DataElementType.TYPE_0, -1, -1, 0));
  return iod;
}

private static void configureIODs(MppsSCP main, CommandLine cl)
    throws IOException {
  if (!cl.hasOption("no-validate")) {
    main.setMppsNCreateIOD(IOD.load(
        cl.getOptionValue("mpps-ncreate-iod", 
            "resource:mpps-ncreate-iod.xml")));
    main.setMppsNSetIOD(IOD.load(
        cl.getOptionValue("mpps-nset-iod", 
            "resource:mpps-nset-iod.xml")));
  }
}

  @Override
  protected IOD retrieveKeysIOD(QueryRetrieveLevel rootLevel,
      boolean relational) {
    IOD iod = queryKeysIOD(rootLevel, relational);
    iod.add(new IOD.DataElement(Tag.StudyInstanceUID, VR.UI,
        IOD.DataElementType.TYPE_1, -1, -1, 0));
    return iod;
  }
},

@Override
protected IOD queryKeysIOD(QueryRetrieveLevel rootLevel,
    boolean relational) {
  IOD iod = new IOD();
  iod.add(new IOD.DataElement(Tag.PatientID, VR.LO,
      !relational && rootLevel == QueryRetrieveLevel.PATIENT
        ? IOD.DataElementType.TYPE_1
        : IOD.DataElementType.TYPE_3,
      1, 1, 0));
  iod.add(new IOD.DataElement(Tag.SeriesInstanceUID, VR.UI,
      IOD.DataElementType.TYPE_0, -1, -1, 0));
  iod.add(new IOD.DataElement(Tag.SOPInstanceUID, VR.UI,
      IOD.DataElementType.TYPE_0, -1, -1, 0));
  return iod;
}

@SuppressWarnings("unchecked")
public static void main(String[] args) {
  try {
    CommandLine cl = parseComandLine(args);
    DcmValidate main = new DcmValidate();
    String iodFile = cl.getOptionValue("iod");
    if (iodFile == null)
      throw new MissingOptionException(Arrays.asList("iod"));
    main.setIOD(IOD.load(iodFile));
    List<String> fnames = cl.getArgList();
    if (fnames.isEmpty())
      throw new ParseException(rb.getString("missing"));
    
    for (String fname : fnames)
      validate(main, new File(fname));
  } catch (ParseException e) {
    System.err.println("DcmValidate: " + e.getMessage());
    System.err.println(rb.getString("try"));
    System.exit(2);
  } catch (IOException e) {
    System.err.println("DcmValidate: " + e.getMessage());
    System.exit(2);
  }
}

  @Override
  protected IOD retrieveKeysIOD(QueryRetrieveLevel rootLevel,
      boolean relational) {
    IOD iod = queryKeysIOD(rootLevel, relational);
    iod.add(new IOD.DataElement(Tag.SOPInstanceUID, VR.UI,
        IOD.DataElementType.TYPE_1, -1, -1, 0));
    return iod;
  }
},

@Override
protected IOD queryKeysIOD(QueryRetrieveLevel rootLevel,
    boolean relational) {
  IOD iod = new IOD();
  iod.add(new IOD.DataElement(Tag.PatientID, VR.LO,
      !relational && rootLevel == QueryRetrieveLevel.PATIENT
        ? IOD.DataElementType.TYPE_1
        : IOD.DataElementType.TYPE_3,
      1, 1, 0));
  iod.add(new IOD.DataElement(Tag.SeriesInstanceUID, VR.UI,
      IOD.DataElementType.TYPE_0, -1, -1, 0));
  iod.add(new IOD.DataElement(Tag.SOPInstanceUID, VR.UI,
      IOD.DataElementType.TYPE_0, -1, -1, 0));
  return iod;
}

@SuppressWarnings("unchecked")
public static void main(String[] args) {
  try {
    CommandLine cl = parseComandLine(args);
    DcmValidate main = new DcmValidate();
    String iodFile = cl.getOptionValue("iod");
    if (iodFile == null)
      throw new MissingOptionException(Arrays.asList("iod"));
    main.setIOD(IOD.load(iodFile));
    List<String> fnames = cl.getArgList();
    if (fnames.isEmpty())
      throw new ParseException(rb.getString("missing"));
    
    for (String fname : fnames)
      validate(main, new File(fname));
  } catch (ParseException e) {
    System.err.println("DcmValidate: " + e.getMessage());
    System.err.println(rb.getString("try"));
    System.exit(2);
  } catch (IOException e) {
    System.err.println("DcmValidate: " + e.getMessage());
    System.exit(2);
  }
}

@Override
protected IOD retrieveKeysIOD(QueryRetrieveLevel rootLevel,
    boolean relational) {
  IOD iod = queryKeysIOD(rootLevel, relational);
  iod.add(new IOD.DataElement(Tag.PatientID, VR.LO,
      IOD.DataElementType.TYPE_1, 1, 1, 0));
  return iod;
}

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How to useIOD in org.dcm4che3.data

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