de.tudarmstadt.ukp.clarin.webanno.tsv.WebannoTsv3Writer java code examples

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private void myMethod () {
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}

List<String> annoPerFeatures = new ArrayList<>();
featurePerLayer.putIfAbsent(aType.getName(), new LinkedHashSet<>());
int ref = getRefId(aType, aFs, aUnit);
if(ambigUnits.get(aType.getName()).get(getFirstUnit(aUnit))!=null && 
    ambigUnits.get(aType.getName()).get(getFirstUnit(aUnit)).equals(false)){
  ref = 0;
if(ambigUnits.get(aType.getName()).get(getFirstUnit(aUnit))== null && 
    ambigUnits.get(aType.getName()).get(aUnit).equals(false)){
  ref = 0;
        Type tType = targetFs.getType();
        AnnotationUnit firstUnit = getFirstUnit(targetFs);
        ref = getRefId(tType, targetFs, firstUnit);
        } else {
          role = replaceEscapeChars(role);
    } else {
      annotation = replaceEscapeChars(annotation);
    setAnnoFeature(aIsMultiToken, aIsFirst, annoPerFeatures, annotation);
  setAnnoFeature(aIsMultiToken, aIsFirst, annoPerFeatures, "*"+ (ref > 0 ? "[" + ref + "]" : ""));

throws AnalysisEngineProcessException
try (OutputStream docOS = getOutputStream(aJCas, filenameSuffix)) {
  resetVariables();
  setSlotLinkTypes();
  setLinkMaps(aJCas);
  setTokenSentenceAddress(aJCas);
  setAmbiguity(aJCas);
  setSpanAnnotation(aJCas);
  setChainAnnotation(aJCas);
  setRelationAnnotation(aJCas);
  writeHeader(docOS);
  for (AnnotationUnit unit : units) {
    if (sentenceUnits.containsKey(unit)) {
      String[] sentWithNl = sentenceUnits.get(unit).split("\n");
      IOUtils.write(LF + "#Text=" + escapeSpecial(sentWithNl[0]) + LF, 
          docOS, encoding);
          IOUtils.write("#Text=" + escapeSpecial(sentWithNl[i + 1]) + LF, docOS,
              encoding);

setChainAnnoPerFeature(aAnnotationsPertype, aType, aFs, aUnit, aLinkNo, achainNo, false,
    false);
sta.setEnd(aFs.getEnd());
sta.setText(aFs.getCoveredText());
boolean isMultiToken = isMultiToken(aFs);
boolean isFirst = true;
Set<AnnotationUnit> sus = new LinkedHashSet<>();
for (AnnotationUnit newUnit : getSubUnits(sta, sus)) {
  setChainAnnoPerFeature(aAnnotationsPertype, aType, aFs, newUnit, aLinkNo, achainNo,
      isMultiToken, isFirst);
  isFirst = false;

  continue;
int ref = getRefId(type, fs, depUnit);
String annotation = fs.getFeatureValueAsString(feature);
if (annotation == null) {
  annotation = replaceEscapeChars(annotation);

ambigUnits.putIfAbsent(type.getName(), new HashMap<>());
for (AnnotationFS fs : CasUtil.select(aJCas.getCas(), type)) {
  AnnotationUnit unit = getFirstUnit(fs);
  if (isMultipleTokenAnnotation(fs.getBegin(), fs.getEnd())) {
    SubTokenAnno sta = new SubTokenAnno();
    sta.setBegin(fs.getBegin());
    sta.setText(fs.getCoveredText());
    Set<AnnotationUnit> sus = new LinkedHashSet<>();
    for (AnnotationUnit newUnit : getSubUnits(sta, sus)) {
      ambigUnits.get(type.getName()).put(newUnit, true);

setSpanAnnoPerFeature(annotationsPertype, type, fs, unit, false, false);
sta.setEnd(fs.getEnd());
sta.setText(fs.getCoveredText());
boolean isMultiToken = isMultiToken(fs);
boolean isFirst = true;
Set<AnnotationUnit> sus = new LinkedHashSet<>();
for (AnnotationUnit newUnit : getSubUnits(sta, sus)) {
  setSpanAnnoPerFeature(annotationsPertype, type, fs, newUnit, isMultiToken, isFirst);
  isFirst = false;

for (AnnotationUnit unit : units) {
  if (unit.begin >= newUnit.begin && unit.end >= newUnit.end) {
    updateUnitLists(tmpUnits, unit, newUnit);
    aSubUnits.add(newUnit);
    units = new ArrayList<>(tmpUnits);
    AnnotationUnit newUnit = new AnnotationUnit(aSTA.getBegin(), aSTA.getEnd(),
        false, aSTA.getText());
    updateUnitLists(tmpUnits, unit, newUnit);
      aSTA.getText());
  updateUnitLists(tmpUnits, unit, newUnit);
  aSubUnits.add(newUnit);
  updateUnitLists(tmpUnits, unit, newUnit);
  aSTA.setBegin(getNextUnitBegin(aSTA.getBegin()));
  getSubUnits(aSTA, aSubUnits);
  aSubUnits.add(newUnit);
  updateUnitLists(tmpUnits, prevUnit, newUnit);
  getSubUnits(aSTA, aSubUnits);

AnnotationUnit govUnit = getFirstUnit(
    getUnit(govFs.getBegin(), govFs.getEnd(), govFs.getCoveredText()));
if(ambigUnits.get(govType.getName()).get(govUnit)==null){
  govUnit =  getUnit(govFs.getBegin(), govFs.getEnd(), govFs.getCoveredText());
AnnotationUnit depUnit = getFirstUnit(
    getUnit(depFs.getBegin(), depFs.getEnd(), depFs.getCoveredText()));
if(ambigUnits.get(govType.getName()).get(depUnit)==null){
  depUnit =  getUnit(depFs.getBegin(), depFs.getEnd(), depFs.getCoveredText());
setRelationAnnoPerFeature(annotationsPertype, type, fs, depUnit, govUnit, govRef,
    depRef, govType);

for (FeatureStructure chainFs : selectFS(aJCas.getCas(), type)) {
  AnnotationFS linkFs = (AnnotationFS) chainFs.getFeatureValue(chainFirst);
  AnnotationUnit unit = getUnit(linkFs.getBegin(), linkFs.getEnd(), linkFs.getCoveredText());
  Type lType = linkFs.getType();
    AnnotationFS nextLinkFs = (AnnotationFS) linkFs.getFeatureValue(linkNext);
    if (nextLinkFs != null) {
      addChinFeatureAnno(annotationsPertype, lType, linkFs, unit, linkNo, chainNo);
    } else {
      addChinFeatureAnno(annotationsPertype, lType, linkFs, unit, linkNo, chainNo);
      unit = getUnit(linkFs.getBegin(), linkFs.getEnd(), linkFs.getCoveredText());

annotation = replaceEscapeChars(annotation);

private AnnotationUnit getFirstUnit(AnnotationUnit aUnit)
{
  SubTokenAnno sta = new SubTokenAnno();
  sta.setBegin(aUnit.begin);
  sta.setEnd(aUnit.end);
  sta.setText(aUnit.token);
  Set<AnnotationUnit> sus = new LinkedHashSet<>();
  AnnotationUnit firstUnit = null;
  for (AnnotationUnit u : getSubUnits(sta, sus)) {
    firstUnit = u;
    break;
  }
  return firstUnit;
}

ambigUnits.putIfAbsent(type.getName(), new HashMap<>());
for (AnnotationFS fs : CasUtil.select(aJCas.getCas(), type)) {
  AnnotationUnit unit = getFirstUnit(fs);
  if (isMultipleTokenAnnotation(fs.getBegin(), fs.getEnd())) {
    SubTokenAnno sta = new SubTokenAnno();
    sta.setBegin(fs.getBegin());
    sta.setText(fs.getCoveredText());
    Set<AnnotationUnit> sus = new LinkedHashSet<>();
    for (AnnotationUnit newUnit : getSubUnits(sta, sus)) {
      ambigUnits.get(type.getName()).put(newUnit, true);

setSpanAnnoPerFeature(annotationsPertype, type, fs, unit, false, false);
sta.setEnd(fs.getEnd());
sta.setText(fs.getCoveredText());
boolean isMultiToken = isMultiToken(fs);
boolean isFirst = true;
Set<AnnotationUnit> sus = new LinkedHashSet<>();
for (AnnotationUnit newUnit : getSubUnits(sta, sus)) {
  setSpanAnnoPerFeature(annotationsPertype, type, fs, newUnit, isMultiToken,
      isFirst);
  isFirst = false;

for(AnnotationUnit unit: units){
  if(unit.begin>=newUnit.begin && unit.end>=newUnit.end){
    updateUnitLists(tmpUnits, unit, newUnit);
    aSubUnits.add(newUnit);
    units = new ArrayList<>(tmpUnits);
   if(unit.begin==aSTA.begin){
     AnnotationUnit newUnit = new AnnotationUnit(aSTA.getBegin(), aSTA.getEnd(), false, aSTA.getText());
     updateUnitLists(tmpUnits, unit, newUnit);
  AnnotationUnit newUnit = new AnnotationUnit(aSTA.getBegin(), aSTA.getEnd(), false, aSTA.getText());
  updateUnitLists(tmpUnits, unit, newUnit);
  aSubUnits.add(newUnit);
  updateUnitLists(tmpUnits, unit, newUnit);
  aSTA.setBegin(getNextUnitBegin(aSTA.getBegin()));
  getSubUnits(aSTA, aSubUnits);
  aSubUnits.add(newUnit);
  updateUnitLists(tmpUnits, prevUnit, newUnit);
  getSubUnits(aSTA, aSubUnits);

AnnotationUnit govUnit = getFirstUnit(
    getUnit(govFs.getBegin(), govFs.getEnd(), govFs.getCoveredText()));
if (ambigUnits.get(govType.getName()).get(govUnit) == null) {
  govUnit = getUnit(govFs.getBegin(), govFs.getEnd(), govFs.getCoveredText());
AnnotationUnit depUnit = getFirstUnit(
    getUnit(depFs.getBegin(), depFs.getEnd(), depFs.getCoveredText()));
if (ambigUnits.get(govType.getName()).get(depUnit) == null) {
  depUnit = getUnit(depFs.getBegin(), depFs.getEnd(), depFs.getCoveredText());
setRelationAnnoPerFeature(annotationsPertype, type, fs, depUnit, govUnit, govRef,
    depRef, govType);

  continue;
int ref = getRefId(type, fs, depUnit);
String annotation = fs.getFeatureValueAsString(feature);
if (annotation == null) {
  annotation = replaceEscapeChars(annotation);

for (FeatureStructure chainFs : selectFS(aJCas.getCas(), type)) {
  AnnotationFS linkFs = (AnnotationFS) chainFs.getFeatureValue(chainFirst);
  AnnotationUnit unit = getUnit(linkFs.getBegin(), linkFs.getEnd(),
      linkFs.getCoveredText());
  Type lType = linkFs.getType();
    AnnotationFS nextLinkFs = (AnnotationFS) linkFs.getFeatureValue(linkNext);
    if (nextLinkFs != null) {
      addChinFeatureAnno(annotationsPertype, lType, linkFs, unit, linkNo,
          chainNo);
      addChinFeatureAnno(annotationsPertype, lType, linkFs, unit, linkNo,
          chainNo);
    linkNo++;
    if (nextLinkFs != null) {
      unit = getUnit(linkFs.getBegin(), linkFs.getEnd(), linkFs.getCoveredText());

annotation = replaceEscapeChars(annotation);

private AnnotationUnit getFirstUnit(AnnotationUnit aUnit)
{
  SubTokenAnno sta = new SubTokenAnno();
  sta.setBegin(aUnit.begin);
  sta.setEnd(aUnit.end);
  sta.setText(aUnit.token);
  Set<AnnotationUnit> sus = new LinkedHashSet<>();
  AnnotationUnit firstUnit = null;
  for (AnnotationUnit u : getSubUnits(sta, sus)) {
    firstUnit = u;
    break;
  }
  return firstUnit;
}

throws AnalysisEngineProcessException
try (OutputStream docOS = getOutputStream(aJCas, filenameSuffix)) {
  resetVariables();
  setSlotLinkTypes();
  setLinkMaps(aJCas);
  setTokenSentenceAddress(aJCas);
  setAmbiguity(aJCas);
  setSpanAnnotation(aJCas);
  setChainAnnotation(aJCas);
  setRelationAnnotation(aJCas);
  writeHeader(docOS);
  for (AnnotationUnit unit : units) {
    if (sentenceUnits.containsKey(unit)) {
      String[] sentWithNl = sentenceUnits.get(unit).split("\n");
      IOUtils.write(LF + "#Text=" + escapeSpecial(sentWithNl[0]) + LF, 
          docOS, encoding);
          IOUtils.write("#Text=" + escapeSpecial(sentWithNl[i + 1]) + LF, docOS,
              encoding);

Javadoc

Export annotations in TAB separated format. Header includes information about the UIMA type and features The number of columns are depend on the number of types/features exist. All the spans will be written first and subsequently all the relations. relation is given in the form of Source-->Target and the RelationType is added to the Target token. The next column indicates the source of the relation (the source of the arc drown)

Most used methods

replaceEscapeChars
addChinFeatureAnno
getFirstUnit
getNextUnitBegin
getOutputStream
getRefId
Annotations of same type those: 1) crosses multiple sentences AND 2) repeated on the same unit (ev
getSubUnits
getUnit
isMultiToken
isMultipleTokenAnnotation
If there is at least one non-sub-token annotation whose begin is larger than this one, it is a multi
setAmbiguity
setAnnoFeature

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How to useWebannoTsv3Writer in de.tudarmstadt.ukp.clarin.webanno.tsv

Best Java code snippets using de.tudarmstadt.ukp.clarin.webanno.tsv.WebannoTsv3Writer (Showing top 20 results out of 315)

How to use
WebannoTsv3Writer
in
de.tudarmstadt.ukp.clarin.webanno.tsv